CDS

Accession Number TCMCG017C21079
gbkey CDS
Protein Id OMO81923.1
Location complement(join(6801..7022,7193..7720,8514..8708,8786..9054,9287..9431,9518..9640,9731..10011,10326..10506,10576..10722,10869..11183,11552..11699,11847..12020,12558..12735,13285..13438))
GeneID InterPro:IPR000571
Organism Corchorus olitorius
locus_tag COLO4_23351

Protein

Length 1019aa
Molecule type protein
Topology linear
Data_file_division PLN
dblink BioProject:PRJNA215141, BioSample:SAMN03160584
db_source AWUE01018186.1
Definition Zinc finger, CCCH-type [Corchorus olitorius]
Locus_tag COLO4_23351

EGGNOG-MAPPER Annotation

COG_category A
Description zinc finger CCCH domain-containing protein
KEGG_TC -
KEGG_Module -
KEGG_Reaction -
KEGG_rclass -
BRITE ko00000        [VIEW IN KEGG]
ko01000        [VIEW IN KEGG]
ko03012        [VIEW IN KEGG]
ko03019        [VIEW IN KEGG]
KEGG_ko ko:K18995        [VIEW IN KEGG]
ko:K20101        [VIEW IN KEGG]
EC 3.6.4.13        [VIEW IN KEGG]        [VIEW IN INGREDIENT]
KEGG_Pathway -
GOs GO:0003674        [VIEW IN EMBL-EBI]
GO:0003676        [VIEW IN EMBL-EBI]
GO:0003723        [VIEW IN EMBL-EBI]
GO:0003724        [VIEW IN EMBL-EBI]
GO:0003729        [VIEW IN EMBL-EBI]
GO:0003824        [VIEW IN EMBL-EBI]
GO:0004004        [VIEW IN EMBL-EBI]
GO:0004386        [VIEW IN EMBL-EBI]
GO:0005488        [VIEW IN EMBL-EBI]
GO:0005575        [VIEW IN EMBL-EBI]
GO:0005622        [VIEW IN EMBL-EBI]
GO:0005623        [VIEW IN EMBL-EBI]
GO:0005634        [VIEW IN EMBL-EBI]
GO:0005730        [VIEW IN EMBL-EBI]
GO:0005737        [VIEW IN EMBL-EBI]
GO:0006139        [VIEW IN EMBL-EBI]
GO:0006396        [VIEW IN EMBL-EBI]
GO:0006725        [VIEW IN EMBL-EBI]
GO:0006807        [VIEW IN EMBL-EBI]
GO:0008026        [VIEW IN EMBL-EBI]
GO:0008150        [VIEW IN EMBL-EBI]
GO:0008152        [VIEW IN EMBL-EBI]
GO:0008186        [VIEW IN EMBL-EBI]
GO:0009507        [VIEW IN EMBL-EBI]
GO:0009536        [VIEW IN EMBL-EBI]
GO:0009987        [VIEW IN EMBL-EBI]
GO:0010467        [VIEW IN EMBL-EBI]
GO:0016070        [VIEW IN EMBL-EBI]
GO:0016462        [VIEW IN EMBL-EBI]
GO:0016787        [VIEW IN EMBL-EBI]
GO:0016817        [VIEW IN EMBL-EBI]
GO:0016818        [VIEW IN EMBL-EBI]
GO:0016887        [VIEW IN EMBL-EBI]
GO:0017111        [VIEW IN EMBL-EBI]
GO:0031974        [VIEW IN EMBL-EBI]
GO:0031981        [VIEW IN EMBL-EBI]
GO:0034641        [VIEW IN EMBL-EBI]
GO:0042623        [VIEW IN EMBL-EBI]
GO:0043170        [VIEW IN EMBL-EBI]
GO:0043226        [VIEW IN EMBL-EBI]
GO:0043227        [VIEW IN EMBL-EBI]
GO:0043228        [VIEW IN EMBL-EBI]
GO:0043229        [VIEW IN EMBL-EBI]
GO:0043231        [VIEW IN EMBL-EBI]
GO:0043232        [VIEW IN EMBL-EBI]
GO:0043233        [VIEW IN EMBL-EBI]
GO:0044237        [VIEW IN EMBL-EBI]
GO:0044238        [VIEW IN EMBL-EBI]
GO:0044422        [VIEW IN EMBL-EBI]
GO:0044424        [VIEW IN EMBL-EBI]
GO:0044428        [VIEW IN EMBL-EBI]
GO:0044444        [VIEW IN EMBL-EBI]
GO:0044446        [VIEW IN EMBL-EBI]
GO:0044464        [VIEW IN EMBL-EBI]
GO:0046483        [VIEW IN EMBL-EBI]
GO:0070013        [VIEW IN EMBL-EBI]
GO:0070035        [VIEW IN EMBL-EBI]
GO:0071704        [VIEW IN EMBL-EBI]
GO:0090304        [VIEW IN EMBL-EBI]
GO:0097159        [VIEW IN EMBL-EBI]
GO:0140098        [VIEW IN EMBL-EBI]
GO:1901360        [VIEW IN EMBL-EBI]
GO:1901363        [VIEW IN EMBL-EBI]

Sequence

CDS:  
ATGCCGTCTCCAACGGCGTCCTGTAGCTCTGCGCAGTCGTCATCATTTCCGTCCCCAAAGTTCTCGTCTCTCCCCATCATGGCGCTCAAGGAGAGAATCATCGAGAAAATTTTCGAGAATCGCGTCACTCTCATCGTCGGTGAAACCGGCTGCGGGAAGAGCTCTCAAGTTCCACAATTCCTGTTGGAGGAAAACATGGCTCCCGTTTTATGCACGCAGCCCAGGAGATTTGCAGTTGTAGCAGTTGCCAAAATGGTTGCCAAAGCTCGAAATTCCGAACTGGGTCAGGAGGTTGGATACCATATAGGTCATTCAAAGCTTCTATCGTCTAGGTCAAAGATTATCTTCAAAACAGCTGGAGTGGTGTTGGATGAAATGCGAGATAAGGGGTTCCAAGCACTTAAATACAAGGTCATTATTCTTGATGAAGTGCATGAAAGATCGATAGAGTCCGATCTTGTCCTTGTTTGTCTGAAGCAATTTTTGCTGAAGAACAAAGACCTGAGGCTGGTATTGATGTCTGCAACTGCTGATATTGGGAGATACAGGGATTACTTCAAGGAACTTGGTAGAGGTGAAAGAGTTGAGGTGCTGGGAATTCCCAGCTCAAACCAGAAAGAAATTTTCCAGCGACAAGTTTCATATCTTGAACAGGTAACTGAATTTCTTGGAATTAATTCAGAGTTAATAACTTCAAGATATTGTTCCGGTCCATGCCCTGCTATGGCAGATGCTGAAATTAAGCCTGAAGTGCACAAACTTATTCATGAATTGTTGTTGTATATCCATGAAAATGAGCCAGATATCGAAAAGAGCATTTTAGTTTTTCTTCCAACATACTATGCCCTTGAGCAGCAATGGTACCTTCTGAAGCCGTTTAGTTCATCCTTTAAGGTTCACATTCTACATCGAAGTGTTGACACTGAACAAGCTCTTATGGCTATGAAAATTTGGAAATCTCACCGTAAGGTAATATTGGCCACAAATATTGCAGAATCATCTGTGACAATACCCAAAGTGGCATTCGTTATTGACTCATGTCGGTCTCTACAAGTATATTGGGACACTGCTCGAAGAAAGGATTCAACAGAGCTTGTTTGGGTTTCTAAGTCTCAGGCTGAGCAACGGAGAGGCAGAACTGGCCGTACTTGCGATGGCCATGTATATCGGTTGGTTACACAATCATTTTTTAGCAACCTCGAAGATTATGAGTGTCCTTCTATATTGAGGTTGTCACTGAGGCAGCAAGTTCTCCAGATGTGCTGCGCTGAATCCAGAGTCATTAATGATCCGAAAGCTTTGTTGCAGAAGGCTCTAGACCCTCCAGATCCTGAAGTTGTTGAAGATGCTTTGAACCTTCTGGTTCATGTTAAAGCACTAGAAAAAACATCTTCAAGGGTCCGGTATGAGCCTACATTTTATGGAAGGCTGCTTGCTGGCTTTTCGCTGTCCTTTGATGCATCTGTGCTTGTTGTCAAGTTTGGGGAAGTTGGGATGTTGCGCGAAGGCATTCTGCTGGGTATATTGATGGATACTCAACCTCTACCTATTCTTCATCCTTTTGGGGAGGAGCATTTGTTTACAGAGTACATAAACTGCTATTTTAGTGGAGATAGTGACAAAATTGTTCTAACTGGTCGAAAGGAGGTGGAGTTTTTGGGAAACTTATGTGCATTTCAATTTTGGCAACGTGTTTTTAAGGATAAGCACCGTCTTGAACATTTGAAACAACTTCTGAAGTTTGACGAACTGAAAGCTGTGACATTATTGCTTCCCAAGCTTGAAGAAGAATGGTGCTCTTTCCATAATCTTGTGCAGTCGTCATTGCATCATGTCTCTGAATTGTATGAAGATGTACTAAATGCCATTCACCGTTTCCGGCCTAAGTTTCTTGCTGCATCTAATGGCCTACCAACTTACTATTCTCCTTATGAATTTGGGCATACTTGCCTTATTCAGTGTCAGCCACCAGGAGAAAAAGATGCACTTTCTTCTAGTGATGAACTGCTTGAGCCATCTTTTGAAACAAGGAAATGTGTTGCTGTACCATTTGTTGCTTCTGGTCACTTTCAGACCAGCGATGTGGCTGAAAAAATGGCAAATGCTATCAAGGAGATAAGAGTTCAATATGCAGAAGACATTTCTGGAAATCACCAGGCAATCATTGGTGACTATGATTCTCATATCTATGGTGGGACTCCTCTGTGTGTTTATTTTGTCAATGGACGTTGCAACAGGGGTAGCCTGTGCAGATTTTCTCATTCACTGCAAGCAAAAAAACCAGCTTGCAAGTTCTTTTTCTCTCTGCAGGGTTGTAGGAATGGAGATTTGTGTTCCTTCTCACATGATTCTGATCACTCTGTCTCATCATATAGCTCAAATGTATGTCTGCAAGAAGATGATCATGCTGATGCGTCATCTCTTCTACAATTGTTACCAACATCTTCTGATGGATGCGTCCTTTTGTTAGATGACACTAATATGCATTTCACGACAAATCTTGCTAACCACTGTGATCCATCAAGAATCATCTGCACCACATCTTTGACAGAAACAGTCATAACTGACCCATCATTGACTGGTGTTAGAATCCTATGGGACCTCCACCATCCCTACCAGACCATCATTTCCATTAGAGGGGACAACCTAATACCATGGAATGAAGTCAAGCTTGTACTGTGGTTTCCTTATCTGGATGGTTATAGTGAAAATTCGGAAATGCAGAAATCCCTTGTGAAGAACTTTTTCGAGTATCTGGCTATCCGAATGATGAGTGATGCCCTCTTTGAGACTAGAGTAATCCTTGCCATGAACAACATCATATTTTCACAGCTACAGGTGGAAAGGTTGGCAAGAGAGAGCTTCTTCTTCCTAACTCAGTCATTTCCATTTGATGAAGCAAGCTTTGGGGAGTTGTTGGATACAGTCACAGTTAACAAGCCGATGGTGGCATCGAGGCCTATCTCATATGTGTTTGACCTTCACCCACCTAGCGATATCCAGTTTGGTGACTATGCTTCTGCATTTCACAAACATCTATATGATCCGTTAACATCTTGA
Protein:  
MPSPTASCSSAQSSSFPSPKFSSLPIMALKERIIEKIFENRVTLIVGETGCGKSSQVPQFLLEENMAPVLCTQPRRFAVVAVAKMVAKARNSELGQEVGYHIGHSKLLSSRSKIIFKTAGVVLDEMRDKGFQALKYKVIILDEVHERSIESDLVLVCLKQFLLKNKDLRLVLMSATADIGRYRDYFKELGRGERVEVLGIPSSNQKEIFQRQVSYLEQVTEFLGINSELITSRYCSGPCPAMADAEIKPEVHKLIHELLLYIHENEPDIEKSILVFLPTYYALEQQWYLLKPFSSSFKVHILHRSVDTEQALMAMKIWKSHRKVILATNIAESSVTIPKVAFVIDSCRSLQVYWDTARRKDSTELVWVSKSQAEQRRGRTGRTCDGHVYRLVTQSFFSNLEDYECPSILRLSLRQQVLQMCCAESRVINDPKALLQKALDPPDPEVVEDALNLLVHVKALEKTSSRVRYEPTFYGRLLAGFSLSFDASVLVVKFGEVGMLREGILLGILMDTQPLPILHPFGEEHLFTEYINCYFSGDSDKIVLTGRKEVEFLGNLCAFQFWQRVFKDKHRLEHLKQLLKFDELKAVTLLLPKLEEEWCSFHNLVQSSLHHVSELYEDVLNAIHRFRPKFLAASNGLPTYYSPYEFGHTCLIQCQPPGEKDALSSSDELLEPSFETRKCVAVPFVASGHFQTSDVAEKMANAIKEIRVQYAEDISGNHQAIIGDYDSHIYGGTPLCVYFVNGRCNRGSLCRFSHSLQAKKPACKFFFSLQGCRNGDLCSFSHDSDHSVSSYSSNVCLQEDDHADASSLLQLLPTSSDGCVLLLDDTNMHFTTNLANHCDPSRIICTTSLTETVITDPSLTGVRILWDLHHPYQTIISIRGDNLIPWNEVKLVLWFPYLDGYSENSEMQKSLVKNFFEYLAIRMMSDALFETRVILAMNNIIFSQLQVERLARESFFFLTQSFPFDEASFGELLDTVTVNKPMVASRPISYVFDLHPPSDIQFGDYASAFHKHLYDPLTS